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ValueSets and Examples needs to be adapted for Hepatite B, Hepatite C, Legionella, Malaria, Monkeypox, Shigella (ValueSet 3)
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View your issue at Applause Testing Services - https://platform.applause.com/products/27563/testcycles/380123/issues/5718494
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I would like to addModuleScore to my R object.
If I use my default assay of integrated, then I get errors that my features are not present in my object
If I switch to RNA assay as my default, I ge…
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View your issue at Applause Testing Services - https://platform.applause.com/products/27563/testcycles/380123/issues/5719229
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Action Performed:
1. Open URL: https://dev-global…
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# Applications
- Serial interval and incubation period estimation for Monkeypox (also used as part of CDC reporting). Censoring adjustment but not right truncation adjusted. Based on `EpiEstim` whi…
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### Current Behavior
When using the `--metadata` input, field values with double quotes in them can result in additional double quotes in the output.
Since the metadata is read through csv.DictRe…
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*Minimum EpiCore variables Neighbourhood of residence, Address of residence, Town or city of residence, Administrative level 4/3/2/1/0 of residence
The day0 schema collects location data based upon…
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Wanted to describe a couple of hurdles to getting feeds to bring into Feedland, and hoping this group might have some possible solutions.
The first scenario: I find a website that has a news page. …
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Hey, @daniel-ji! I just updated ViralMSA's preloaded reference genomes to support aliases (e.g. "Monkeypox" being an alias for "Mpox", and "SC2" + "COVID-19" being aliases for "SARS-CoV-2"). In the Vi…
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## Context
In a pathogen repo, there will technically be 3 separate workflows that can be run: ingest, phylogenetic, and nextclade.
It's unclear how we want to set up the standardized GitHub Actio…