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Provide detail instruction on how to run the pipeline locally on a MAC OS X system
Code review: @archanaraja
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It should be identical to the motrpac-rna-seq-pipeline.
Discuss how to unify the documentation
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Accessions like "Q13574-1" become "Q13574_1" when PTM information is added. Unknown if other symbols are similarly replaced by underscores. Unintended behavior may be due to the use of `map_peptide_po…
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CONV assays are derived from the same "raw" file. However, only unique raw files are allowed when checked by `check_metadata_samples`, except for the Emory assays (which have the same problem). Add e…
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`bid`
:x: "integer, unique, randomly generated 8 digit numeric identifier used in linkage to phenotypic data"
:heavy_check_mark: "Unique 5 digit numeric identifier of all samples collected for an…
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It appears that there are 7 additional transcripts in `TRNSCRPT_WATSC_NORM_DATA` that should not be there, assuming the dataset was generated with `MotrpacRatTraining6mo::transcript_normalize_counts`.…
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Include Steve's script (1_install.sh) from refactor_deploy branch for installing packages inside the VM
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