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Hi all,
I can't find which methods are available in pyOpenMS to extract MS1 XIC from mzML files. I know there is OpenSWATHChromatogramExtractor in OpenMS but it seems like it's not available in pyO…
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Feedback from @annatagliaferri
have a general introduction to explain:
- LC-MS
- MS1
- MS2
- whole concept why we have this workflow
- emphasize need for adaptability
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## Directions
> The final set of visualizations that you will create are shot maps for a given NHL team, for a given year and season.
- [x] colors make sense for negative value (Tim)
- [x] Export…
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implement an ipywidget that allows you to flip through all of the events, for every game of a given season, with the ability to switch between the regular season and playoffs.
See [Google doc](http…
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Hello everyone,
I am using DIA-NN to analyze ultralow sample data acquired with diaPASEF and VistaScan modes from timsTOF Ultra 2.
Multiple peptides of interest fall outside of the fragmentation win…
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### Basic information
* My operating system and version: Intel Core i7-6700K. Windows 10 22H2
* My mzmine version: 4.2.0
### What happened
Previous steps applied to files:
MS1 and MS2 featu…
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I have been having issues with metID.dbAnnotate when I set MS1adducts= TRUE. I get this error message:
Error in strsplit(esiTmp, " ") : non-character argument
I think (though I am not certain) th…
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The goal is to extract for a feature the (full) MS1 spectrum at the features' (peaks') apex position:
```r
## Define the ID of the feature.
ft
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Would it not be more useful to have the "ion maps" more like conventional RT - m/z maps, instead of the density graphs?
I assume, the common user would be more used to these.
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Dear Dr. Yuan,
Thanks for making the tool! It is awesome!
I have a difficulty running EpiProfile2.0_PlasmodiumFalciparum. I have Xcalibur and Matlab + necessary packages installed. When I run Ep…