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Hi,
I am struggling to run the step4 of the pipeline, I have the flanking.read produced but not the fullreads:
/home/cecile/Desktop/Postdoc_cecile/2_Zymo/4-Mutation_accumulation_analysis_TE_dyna…
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Hello Mutation Analysis Team,
Just wanted to say thanks for this very cool project, mutation tests are awesome!
I have a small issue, when running mutation tests with JUNIT 5 + pitest + SonarQub…
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**Is your feature request related to a problem? Please describe.**
Safe mode removes many valid mutations as a side effect. This is a loss of information in itself; also, with the evolution of the C#…
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I run mutation testing in CI environment (I am using CircleCI). The history is stored in CircleCI cache between runs to speedup the analysis. Everything works fine when there is a cache.
However, whe…
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Currently versifer (automatic protocol reverse engineering) does only very basic analysis of text protocols. There are plenty of things that can be improved:
- Rewrite analysis (currently is it more o…
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### Description:
As a user, I want to be able to understand the relevance of gene mutations.
Jira ticket [PDXI-13](https://www.ebi.ac.uk/panda/jira/browse/PDXI-13)
Proposed resolution:
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http://…
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As of now, SonarCloud does not support plugins, therefore no mutation analysis issues can be added to SonarCloud projects.
However, it provides a way to add externally raised issues to the analysis…
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There are a number of ways to define or identify _recurrent_ mutations. The purpose of this issue is to discuss how to define a "recurrent mutation" throughout the project, with some acknowledgment th…
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Hi
I am running some whole genome analysis but I am getting the attached error
using mutect2 and sequenza
run this
`fit
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The creation of the ddt_data.js file will have an amount of duplicate entries of mutations according to however many file_names/sample_names are included in the lineage analysis process.
For example,…