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Hi, while i was trying to run ncbi blast in apscale, in some of the fasta subsets i keep encountering this error. I've tried to exclude uncultured sample sequences during blast search and downloaded x…
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Hi,
I am not 100% sure that I am not misreading this, but in:
https://github.com/CVUA-RRW/FooDMe/blob/master/ressources/fetch_nt_blast.sh
it reads as if the script downloads directly out of htt…
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Hi,
I'm trying to use your software but stopped at step of setting 'full path to the blastall and formatdb executables on your computer'.
Since 'The original standalone BLAST package based on NCBI …
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Why is job 8712B1497978065E708AD3433906A4A8 so slow?
This job was running subjobs > 50minutes in runtime before being manually killed. Why are these jobs so slow?
Additionally this full job broke…
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Reported by a user:
```
$ blastx \
-db /blastDB/uniref90 -query genome.cds \
-out Genome_UR90_02062018.cds.tsv 1>blastx.log 2>blastx.err \
-outfmt "6 qseqid sseqid slen length pident …
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I am new to BRIG using Mac OS 10.14. I have installed the latest version of BLAST, located it in my directory, and have BRIG pointed to NCBI blast folder in the correct place. However, every time I tr…
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Hi
nextflow run asadprodhan/sangerFlow -r f7e4fac --db=/mnt/d/ampliicon_analysis/ncbi-blast-2.15.0+
N E X T F L O W ~ version 0.30.1
Launching `asadprodhan/sangerFlow` [prickly_saha] - revision: …
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Hello!
I want to analyse my samples against 16S NCBI database, which I downloaded previously, but when I tried the last step, function predict(), its takes 5 days without results. Do you know what…
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BLAST often fails, and also using too many BLAST resources can get you banned from using BLAST. Right now the pipeline fails (in query mode) if it receives no BLAST input. It would be helpful to be a…
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### Publication and Data Information
There are a number of avocado transcriptomes:
- https://www.sciencedirect.com/science/article/pii/S0304423818307064 - Accession: PRJNA258225
PRJNA258225 https…