-
Hope it finds you well.
I'm using DIA-NN 1.9 and Skyline (64 bit) 24.1.
I'm trying to use following skyline visualiation function.
_Skyline. To visualise chromatograms/spectra in Skyline, analy…
-
I encountered an error while using this method: KeyError: 'XcXgXyXtXyXgXd'. So, I checked the result returned by the get_struc_seq method. The seq, which should store the original amino acid sequence,…
-
**Describe the bug**
Running any MaxDIA pipeline using .wiff as input fails on Feature detection step:
```
Configuring
Assemble run info
Finish run info
Testing fasta files
Preparing searches
…
-
Hello,
I was wondering if I can use AutoDock-Vina for docking between proteins and peptides.If not, do you have other suggestions?
Best Regards
Soodabeh
-
`{"detail":"Command '['netMHCpan', '--version', '_MHCTOOLS_VERSION_SNIFFING']' returned non-zero exit status 1."}`
```
# /opt/netMHCpan-4.1/Linux_x86_64/bin/netMHCpan --version _MHCTOOLS_VERSION_S…
-
Hello,
While running mhcflurry, I get this error (shown in the last few lines)
2022-08-11 01:32:37,063 - isovar.effect_prediction:112 - INFO - Keeping 0 effects with predictable AA sequences for V…
-
I want to convert the predicted HLA peptides into a speclib with peptdeep & run it in DIA-NN. Is there an option to include the protein name/ FASTA header in the output when doing this?
-
Hello everyone,
I am using DIA-NN to analyze ultralow sample data acquired with diaPASEF and VistaScan modes from timsTOF Ultra 2.
Multiple peptides of interest fall outside of the fragmentation win…
-
Hello Vadim and Team,
I am using a spectral library for modified histone peptides that I built in skyline. I have some questions regarding using this library...
1. What is the best way to conver…
-
**Steps to Reproduce**
1. Switch to Macro mode
2. Open file with Peptides
[ketcher (OK).zip](https://github.com/epam/ketcher/files/15040122/ketcher.OK.zip)
3. see preview of **O** peptide
…