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I got the following error when running RATTwithGFF:
> converting chromosome_1.gff to chromosome_1.embl....
usage: EMBLmyGFF3 [-h] [-a] [-c CREATED]
[-d {CON,PAT,EST,GSS,HTC,H…
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Hello Pierre-Henri
As you'll see in the reviewed Issues, we marked the first three challenge stages complete. The fourth stage followed the steps but had a critical error in the teragen command inv…
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Here's my command:
```
(ratt_env) -bash-4.1$ RATT-with-GFF/RATTwithGFF.py Gene_Models/spp.gff3 Gene_Models/spp.scaffolds.fa Assemblies/Sch523_scaffolds.fasta refToQuery Strain
checking for valid…
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Hello,
According to the paper, INPHARED should only include genomes producing virions:
> We also assume the genomes are from phages that have been shown to produce virions and are not prediction…
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The following suggestions refer to the first and second figures in the manuscript (1. fig:domains; 2. fig:apps).
- It would be nice to coordinate the color scheme between figures 1 and 2. The backg…
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When I call ``datalad xnat-init`` without a project specification or ``datalad xnat-update`` without a subject specification, the resulting list of available projects/subjects can flood the terminal i…
adswa updated
3 years ago
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I have used rPHGv1 with server connection to maizegdb and was able to set a method such as `G2F_2014-2023_PATHS`. I have been looking for documentation here on how to use a server connection and I hav…
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There are a lot of metadata boxes in current use for audio and video files that apparently have never been registered, or are at least missing not documented at the MP4RA site (and in this repository)…
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Hello,
I was trying to use rPHG2. But I am getting an error. Could you please help me ?
> hVcfFiles localCon PHGLocalCon()
>
> localCon
A PHGLocalCon connection object
❯ DB URI.... : ◯…
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Unit 4 exercise plz commit here.