-
**Describe the bug**
_roi_filter() fails if ROI is empty and roi_type set to "largest"
line 89:
`index = np.argmax([cv2.contourArea(c) for c in kept_cnt])`
_ValueError: attempt to get argmax of an…
-
We are going to deploy our panicle detection extractor on Bioinformatics core facility at the Donald Danforth Plant Science Center(HTCondor). I am now creating this issue to address the current status…
-
**Describe the bug**
When converting a results.json file to .csv using `plantcv-utils json2csv` some traits are not in the converted file, i.e. present in json but not in the csv. Namely, center of m…
-
### Current Behaviour
Hi there, I am having an error message for running profile report.
my code is as below:
pip install pandas-profiling
from pandas_profiling import ProfileReport
prof = Pro…
-
Hi all,
When trying to use plantcv, which I have absolutely no experience with, I am getting the error "ImportError: DLL load failed while importing cv2: The specified module could not be found."
…
-
It is useful to know who is using scikit-image when planning funding proposals. I was looking a little into how one can extract information such as that presented in [GitHub's dependents view](https:/…
-
Hi there- the command
pcv.segment_image_series
wants a list of images for the rois parameter. However the pcv.roi.multi doesn't return a list (but an object class). In
the ol…
-
Good evening, I have been following the workshop on YouTube (really helpful!) and trying to build my own code to analyze my image pictures.
However, every time when i try to do the "plantcv-workfl…
-
Steps:
1. Identify citation or write a protocol on protocols.io
2. Add a single method for the extractor terraref.ncsa.illinois.edu/bety/methods/new
3. Add a variable for each phenotype terraref.…
-
**Describe the bug**
Hi all,
when I try to use the Parallel workflow for all my pictures running on a terminal, the latest error I got is as follows.
usage: FFinal-plantcv-workflow.py [-h] --…