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Hello, I am using your pipeline to design hemoglobin binding protein. When I run the code segment "Analyzing diffusion outputs," I encounter the following error. Thank you very much for your help.
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Several scientists from UCL team (Hadia Almahli) and DLS team (Jasmin Aschenbrenner and Daren Fearron) carried out multiple curations for the various sets of merged compounds (1500 compounds) propose …
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While I was reviewing the code, I noticed that the contact_map seems to be a requisite for the input data of model. Does this imply that if I only have the sequence of a protein but not its actual thr…
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https://doi.org/10.1101/137828
> Understanding the relationship between protein structure and function is a fundamental problem in protein science. Given a protein of unknown function, fast identif…
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I tried to use different ligands to dock with the proteins in the repo .According to the files in your examples, when I tried to dock with 2br1_protein.pdb and 2wtv_protein.pdb, it worked .But when I …
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**Aim:**
This issue addresses how to apply LigGrep to filter through docked ligand poses to check that they retain key interactions with the protein that are observed in crystallographic fragment-p…
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A generally applicable allowed structure generator could be constructed to streamline code and remove duplicate sections, as well as prevent unnecessary calculations of illegal protein structures. It …
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- Convincing active hits against SARS-CoV-2 helicase remain elusive despite attempts from many groups and organisations.
- Zhou et al. (2024) https://doi.org/10.1038/s41557-024-01442-y published …
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I encountered the following error while running the program. How can I resolve it? Thanks
Traceback (most recent call last):
File "../../../PLANET_run.py", line 174, in
predicted_affinit…
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https://www.biodasturchi.uz/posts/2020-11-30-it-will-change-everything.html
Google’s deep-learning program for determining the 3D shapes of proteins stands to transform biology, say scientists.