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If the SED-ML defines two plots with the same 'name' (which is perfectly legal in SED-ML), biosimulators gets confused, will only show one of them despite listing both on the pulldown menu, and will r…
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## Describe the issue
I would like to discuss a portable method to _preserve_ carriage returns when using `sed` and `awk`.
The use-case is: I'm working on a script to process a file that may hav…
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Posting this here because I'm not aware of a more appropriate place. Feel free to transfer this elsewhere.
## The issue
Because `master` has negative connotations, many people are replacing the te…
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This issue stems from the fact that published exposures in PMR have a "Launch in OpenCOR" link. Those links rely on OpenCOR's URI scheme. For instance, the "Lauch in OpenCOR" link at https://models.ph…
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#### Description of the problem
I'm trying to build Coq for Void Linux, the i686 target. It fails with errors like
```
File "theories/dune", line 1807, characters 1-778:
1807 | (rule
1808 | …
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As new features have been added, SED has grown more capable but also more complex to implement. This compels developers to implement more features, which increases the barrier to entry. This also crea…
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`BIOMD0000000724` : `Theinmozhi_2018.sedml`
- plot_8_task2: 7a
- plot_9_task2: 7d
- plot_10_task2: 7c
These plots involve +PD1 simulations. However, they look like the published -PD1 results. …
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The specifications suggest that model files should define namespaces with prefixes:
```
xmlns:sbml=‘http://www.sbml.org/sbml/level3/version1/core’
```
such that XPATHs such as below are well-def…
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Steps to reproduce:
```
$ mix new sweetness
$ cd sweetness/
$ sed -i 's/deps: deps()/deps: [{:mix_caramel, git: "https:\/\/github.com\/AbstractMachinesLab\/mix_caramel"}], compilers: [:caramel] ++…
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### Contact Details
_No response_
### Location
runBiosimulations
### What happened?
When running the attached SED-ML file, biosimulations claims there's an error:
```
target /sbml:s…