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Hello,
I've been trying to upgrade my pyABC scripts from a parallel to a distributed execution of simulations and I've failed to do so for the moment. Since I will execute my script in a cluster th…
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Adding this optimization to `codegen/src/opts/icmp.isle`
```
;; sge(x, c) == sgt(x, c-1), for c != SMIN.
(rule (simplify (sge (fits_in_64 (ty_int bty)) x (iconst cty (u64_from_imm64 c))))
…
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LLVM canonicalizes non-strict comparisons against constants to strict comparisons (eg `ule x, c` => `ult x, c+1`). This results in less optimal AArch64 assembly if `c` can be encoded in a single `mov`…
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Hi, what do I need to do to adapt this pipeline to run on a linux box bypassing SGE (I have no access to a server running such a facility); would that lead to restriction for the number of RNA sequenc…
brobr updated
5 years ago
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I am interested in how this could be extended to support other HPC backends. In particular, a [Rocks](http://www.rocksclusters.org/)-based system, a common bioinformatics HPC platform. I have very bri…
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```
Hi,
switched our cluster to SGE the other day and wanted to run a simple bpipe
pipeline. However, specifying resources as described in the documentation
yields an error. For example, we have a …
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### 📜 Description
while testing the SGE on private clusters, we found some issues with AWS specific annotations that worker-operator is adding.
```
// Note: Special treatment for AWS EKS cluste…
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`qconf -se ` can be used to get the SGE configuration for a specific execution host, e.g.
```sh
$ qconf -se qb3-atgpu1
hostname qb3-atgpu1
load_scaling NONE
complex_values…
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**Description**
I am encountering an issue with Bactopia versions 3.1.0 and 3.0.0 in my HPC environment. When submitting Bactopia jobs to the SLURM scheduler, the jobs consistently fail after around …
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In fsl.py --> check_first it uses SGE_ROOT to check for the sge queuing system; however, not all sge queuing systems use SGE_ROOT (e.g., Gridengine on Debian/Ubuntu). If both SGE_ROOT or FSLPARALLEL …