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We're trying to get an image ready to launch on jupyterhub with kubernetes. Current attempt is on https://github.com/paskino/SIRF-SuperBuild/tree/add_jovyan_user/docker
This does not use `docker-co…
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If I understand correctly, the docker image uses miniconda python.
`Dockerfile` calls [`user_python-ubuntu.sh`](https://github.com/SyneRBI/SIRF-SuperBuild/blob/master/docker/Dockerfile#L73) without…
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The Docker README says that after following the TL;DR instructions that SIRF-Exercises will be available under ./devel, however they are not.
When running interactively to investigate:
```
> dock…
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At present, the docker images copies the SIRF-exercises to `/devel`:
https://github.com/SyneRBI/SIRF-SuperBuild/blob/32b0126e00dd69b15b3223fb1b8334e2d5804bcf/docker/service.sh#L39-L41
This might m…
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1) Spelling mistake in first cell, 'k-psace' should be 'k-space'.
2) Instructions about starting the gadgetron should say that if you are using Jupyter from a Docker service container, gadgetron is…
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On the docker image, we start in /devel such that it can see `SIRF-Exercises` etc. Here we currently start in `SIRF-Exercises/notebooks`. That means users cannot see `SIRF-Exercises/data` etc. Best to…
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When my SIRF is compiled with ISMRMR 1.4.1, running `SIRF-Exercises/Introductory/acquisition_model_mr_pet_ct.ipynb` gave
```
mr_acq = mr.AcquisitionData(os.path.join(examples_data_path('MR'),'grappa…
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Currently, to point a newbie from this repo to installation instructions, we need to point them to
https://github.com/SyneRBI/SIRF/wiki/How-to-obtain-SIRF
Which for the VM points to
http://w…
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https://github.com/SyneRBI/SIRF-Exercises/blob/master/DocForParticipants.md
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interesting, is it going to fail on JupyterHub (and docker) due to read-only location? Better to write it in the current dir?
_Originally posted by @KrisThielemans in https://github.com/SyneRBI/SIR…