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New issue to follow up topic raised in https://github.com/EnvironmentOntology/envo/issues/333#issuecomment-370286803
The Australian Soil Classification [1] has the following top-level orders:
A…
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I'm trying to use Funguild to make guild assignments to an OTU table generated from NEON soil metabarcoding sequences. I've got a csv containing 22,709 OTUs, with their taxonomy specified all the way …
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- [x] Add {data.tree} to suggests
- [x] Develop a few standard path strings that can be used with standard datasets (or subsets thereof)
- [ ] Functions for writing a formatted tree to:
- [x]…
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Hi I have 5 sites and would like to calculate the top five most abundant genera for each site. I have found code that does this for the who data set but not for each site/group?
This is the code i…
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Following up on a chat between @dylanbeaudette and myself.
I've reversed a commit I've just pushed, as this is a drastic change that requires discussion.
At the moment, `min` and `max` are over…
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See also colouring-cities/colouring-london#117
https://github.com/gem/gem_taxonomy
Sub cats below as discussed with the Global Earthquake Model foundation (GEM) and drop down taken from
GEM …
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Starting point tutorial from Dylan: http://ncss-tech.github.io/AQP/soilDB/SDA-tutorial.html
- Very convenient SQL query test page for SDA queries: https://sdmdataaccess.sc.egov.usda.gov/Query.aspx
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### Description
I tried all sorts of things when getting started including a category relationship field. I have since deleted that and associated it to a custom taxonomy.
I am listing all "plant…
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I am having trouble getting a Krona graph from stand alone attempts, Galaxy, or the phyloseq package in R. Anywhere really. My data are microbial OTUs classified to genus, split into 10 different sa…
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Tree pages should have common, scientific, size, evergreen/deciduous, Native, watering needs, How to care for, debris, and other data similar to [calscape.org](https://calscape.org/loc-California/Quer…