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Hi:
I used the MACS2 to deal with the ATAC-seq. The command was `macs2 callpeak -t /Sh4-1.chr_filt_dedup_sortbyname_fixed_tn5.bedpe -f BEDPE -n Sh4-1 -g hs --outdir ./ -B --keep-dup all --call-summi…
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It would be bodacious to give our Awesome team members a little more love, more information for the community, and some link-juice by creating Trustee and Dean profile pages.
Features:
- Tenure (…
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**Describe the bug**
Setting `--modelonly true` is ignored.
**To Reproduce**
`java -jar HMMRATAC_V1.2.10_exe.jar -b 65283_treat_rep1.chr22.20to30MB.bam -i 65283_treat_rep1.chr22.20to30MB.bam.ba…
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_From comment on review here: https://github.com/CommunityToolkit/WindowsCommunityToolkit/pull/4206#discussion_r701496569_
## Describe the bug
Our DataGrid Mountain CSV file: https://github.com/…
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**Is your feature request related to a problem? Please describe.**
I'm running a test in a github action using `snakemake/snakemake-github-action@v1`. The one test that's failing has no error outp…
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Hi Tao,
Apologies if this is not the correct place to post a function request, but I'm not sure whether people are still visiting the macs google user group.
https://groups.google.com/forum/#!to…
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Chrombpnet defines the peak center as `start + summit`, not the midpoint between `start` and `end`. It would be good to make `write_bed_from_h5` consistent with this convention.
https://github.com…
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## **Describe the bug**
Hi, I noticed that the final set of reproducible peaks, idr.optimal_peak.narrowPeak.gz and overlap.optimal_peak.narrowPeak.gz contain duplicate regions with exactly the same c…
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Begin to work on copy for Future News Posts that will appear at https://2019.badcamp.org/articles, in advance of those milestones actually occurring.
These milestones include, but are not limited…
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Once basic domain analysis is done, we can effectively save summit, saddle, and linker objects as sparse objects -- effectively tossing out multipoints, highedges, and other offencive data hogs. this …