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### What happened?
I am trying to run wf-human-variation with demo data using the exact demo settings and getting an error.
Error executing process > 'bam_ingress:check_for_alignment (1)'
C…
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### Operating System
Other Linux (please specify below)
### Other Linux
ubuntu 20
### Workflow Version
v.1.8.3
### Workflow Execution
Command line
### EPI2ME Version
_No response_
### CLI co…
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I'm unsure if this is the case. I'll try to explain as best I can here. So I'm writing a pipeline to do QC of exome data which consist of steps for left normalizing, splitting multiallelic variants an…
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Hi!
Recently I am using `plot-vcfstats` to evaluate our QC pipeline. This is the output of QC result vcf (chromosome22 of 1500 WGS data). I am wondering how to interpret if the QC is good or not? O…
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When I run test cases with 7.2.0 I get this error:
```
py39-opentelemetry-sdk installed: asgiref==3.5.2,attrs==22.1.0,Deprecated==1.2.13,exceptiongroup==1.0.0rc9,flaky==3.7.0,iniconfig==1.1.1,open…
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Parsing bcftools stats output: AD68846579TE.hard-filtered.stats.stats …
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Hi all,
After a successful docker instalation of the vcfstats image, the command line
'docker run --rm justold/vcfstats:latest vcfstats --vcf myfile.vcf -o outputs --formula 'COUNT(1) ~ CONTIG' --ti…
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### What happened?
Keep getting an error about running out of memory in GPU, tried multiple computers with different operating systems, same error.
Ran with following parameters:
`OUTPUT=output…
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as I see vcfstats 0.4.2 required numpy =1.22. However when I try to create SNP dist plot via
vcfstats --vcf examples/sample.vcf \
--outdir examples/ \
--formula 'COUNT(1, VARTYPE[snp]) ~ SUBST…
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How can I keep chr order as I like while using the command below;
```
vcfstats --vcf examples/sample.vcf \
--outdir examples/ \
--formula 'COUNT(1) ~ CONTIG[1,2,3,4,5]' \
--title 'Number of…