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Having extra metadata you can add to denote the interface of an h5ad and h5mu file can be used later on for checking whether the files adhere to a certain interface.
Right now a viash config doesn'…
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__Note:__ This is actually not an issue on the part of the `rnaseq` workflow itself, but since it appears for this workflow package I describe the issue here.
The way Viash generates the unit tests…
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### What happened?
During installation R package that does not exist, I encountered an issue where this error was not reported during build.
### Steps to reproduce
```
mkdir -p /tmp/test_bug…
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If we use BFG to remove all blobs larger than 1M, we can reduce the openpipeline repo from 200MiB to around 44MiB. We can probably reduce it even further if we set the threshold even lower. @DriesScha…
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Current error message:
```
Traceback (most recent call last):
File ".viash_script.sh", line 80, in
genes_column = data.var[par["var_gene_names"]] if par["var_gene_names"] else data.…
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### Feature summary
Not sure if this is a bug or a feature, since I don't know what your expected behaviour is for this :stuck_out_tongue:
Passing `PARAMETER=1:2:null:4` to an argument that accep…
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make sure that the default output filename of a pipeline is `...` and not `...`
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Continuation of #1 by @LuckyMD :
> Another aspect, I haven't touched yet is whether we can have the metrics output a tsv file instead of an AnnData object? We could then concatenate all individual …
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### What happened?
When setting `organization: my_org` in the package config and running tests, the organization is not added to the docker image name.
### Steps to reproduce
```bash
docker …
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### What happened?
The json schema has a wrong type specification for the repositories. According to the schema, the repositories field in the following yaml is invalid:
```yaml
repositories:
…