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ECTO depends on NPO, an ontology not listed in the OBO Foundry:
https://github.com/OBOFoundry/OBOFoundry.github.io/blob/e02769b65ce671f3d3478b09904052cbc759130d/ontology/ecto.md?plain=1#L42
I be…
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There are several ontologies that are not marked as deprecated that don't have licenses (though it might be the case that all are orphaned). Worse, these ontologies are offenders in not having very we…
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Noting some instructions I used for installing on a linux server, if want to add to readme.
Works with Biomappings version = 0.1.3-dev
On Ubuntu 18.04+ [on fresh server]:
``` sh
py_36 () {
…
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http://bioregistry.io/registry/doi
will map a CURIE `doi:10.1038/nbt1156` to
http://doi.org/10.1038/nbt1156
which is perfectly fine for humans (although it should be https, that is not my c…
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When you try to expand OMIM:PS123, you will run into issues if you have the canonical prefix mapping:
OMIM: http://omim.org/entry/
OMIMPS: http://www.omim.org/phenotypicSeries/PS
You have to wr…
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Currently getting `ERR_EMPTY_RESPONSE` when I visit https://bioregistry.io/ as of 2021-11-18T15:17:00Z
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New term request for "Fragile site"
Name: fragile_site
Definition: "A fragile site is a heritable locus on a chromosome that is prone to DNA breakage" (from HGNC definition).
Also, wiki article: https…
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In a recent issue on OBO: https://github.com/OBOFoundry/OBOFoundry.github.io/pull/1703
a ontology provider noticed that they had just registered a prefix with OBO that conflicts with BioPortal. I …
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lol, @cthoyt and I keep independently developing similar things
https://pypi.org/project/prefixcommons/
which is the python lib for:
https://github.com/prefixcommons/biocontext
the idea is…
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I'm encountering an error with linkml-runtime which is `ValueError: Unrecognized prefix: https://w3id.org/csolink/vocab/` .
I'm not sure why model with curie `csolink:xxxx` would generate this err…