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### Description
After updating pandas to 1.3.0, I started getting errors with `gr.ligrec`. Reinstalling 1.2.5 seemed to have solved this.
### Traceback
```pytb
--------------------------…
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Hi guys,
I have just tried the receptor/ligand implementation in squidpy and I think it's very cool (and fast)! One little issue is that the torus/dot distinction is not really intuitive in the plo…
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### Type of the feature
- [ ] New function in `sqduipy.im`?
- [ ] New function in `squidpy.gr`?
- [ ] New function in `squidpy.pl`?
- [ ] Change an existing functionality, such as default behavi…
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Hello! I just saw your preprint on this and was very excited to try. Can you shed some light on whether we can run this pipeline within R/Rstudio on our seurat objs? We currently have a few datasets t…
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### Description
First off, thanks for making a great tool with tons of examples/tutorials! I noticed that `scapy.read_visium()` is referenced in the ["Import spatial data in AnnData and Squidpy" tuto…
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### Type of the feature
- [ ] New function in `sqduipy.im`?
- [x] New function in `squidpy.gr`?
- [ ] New function in `squidpy.pl`?
- [ ] Change an existing functionality, such as default behavi…
giovp updated
3 years ago
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I have updated Liana to 0.1.0 version from 0.0.9. It seems like method 'cellchat' is not there anymore and 'call_cellchat' exists instead.
First, does this mean that re-implemented version of cellch…
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This is the conda list results:
```
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex …
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@michalk8 potentially problematic...
Details
```
---------------------------------------------------------------------------
NotImplementedError Traceback (most recent …
giovp updated
3 years ago
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### Type of the feature
- [x] New function in `sqduipy.im`?
- [ ] New function in `squidpy.gr`?
- [x] New function in `squidpy.pl`?
- [ ] Change an existing functionality, such as default behavi…