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- [x] I have checked that this issue has not already been reported.
- [x] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (optional) I have confirmed this bug exists on the m…
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I can run everything without problem until these lines:
```
%%R -i data_mat -i input_groups -o size_factors
size_factors = computeSumFactors(data_mat, clusters=input_groups, min.mean=0.1)
```
whe…
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First of all, I really appreciate your work in contributing this library, it's really useful. However, while following your [tutorial](https://github.com/divelab/DIG/blob/dig/benchmarks/xgraph/subgrap…
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**Describe the bug**
Getting an error when creating a Series from float16 CuPy objects, which I believe was not present before https://github.com/rapidsai/cudf/pull/8949
**Steps/Code to reproduce…
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**Describe the bug**
I am using nvtabular:0.2 singularity image and dask_cudf.read_csv hangs.
**Steps/Code to reproduce bug**
```
singularity run --nv docker://nvcr.io/nvidia/nvtabular:0.2
``…
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- [Yes ] I have checked that this issue has not already been reported.
- [Yes ] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (optional) I have confirmed this bug exists on…
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Hi Tommaso,
Thanks for the great tool! I'm trying to apply it for deconvolution of Visium data, and am puzzled with few questions.
First, what's the best way to normalize the data? In the example y…
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https://mp.weixin.qq.com/s/XvTlG4n_p5o-IN3plBt3sQ
ixxmu updated
3 years ago
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Hi
I got a error when I used a pre-computed graph to run umap as follows:
```R
seu
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When I try to run vib-singlecell-nf /vsn-pipelines example ( the single-sample) configured to use singularity I get this error
**_Invalid method `doCall` invocation with arguments: on _closure15 ty…