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I'd like to start a discussion on how to implement management of growth media. I can think of two approaches:
1. Add a new method to cobra.Model that takes either a dictionary or a json file with the …
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So I'm brand new to this, and I can tell there is a ton of coders here, but I am a molecular cell biologist. I want you guys to make a dynamic 3D systems biology modeling simulator for the different i…
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- No 1s on diagonals for overlap
- Disagrees with PySCF and PSI4
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In estimators.moments_XXXY, the arrays X and Y are centered at different means (namely (1/w)_sx, (1/w)_sy) if remove_mean=True and symmetrize=False. Isn't that inconsistent? I think they should be cen…
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# Why APBS and PDB2PQR?
An understanding of electrostatic interactions is essential for the study of biomolecular processes. The structures of proteins and other biopolymers are being determined at a…
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# Solvation models
Electrostatic and solvation models can be roughly divided into two classes (Warshel, 2006; Roux 1999; Ren, 2012) explicit solvent models that treat the solvent in atomic detail and…
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I joined the Matchmaker Exchange group late last year. After reading up the work done by GA4GH, I found the avro schema files confusing.
After several working group calls and many emails, I managed t…
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Hi, we would like to request 2 new terms to be used by the IEDB DO:
'has allergic trigger' is a relationship between a disease (domain) and material entity (range) where the realization of the disease…
rvita updated
8 years ago
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Define the specific types of Ion Channels and how they work within the cell.
[Here's a powerpoint presentation](https://www.dropbox.com/s/766uv7dbi4d9ojw/Open%20Worm%20Journal%20Club%202.ppt) that ex…
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I believe that the first page that pops should state something like:
insilichem.bio - Molecular Modeling for study and design of chemobiological (or Chemobiotechnological) systems
The concept of sol…