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### Description
In #320, propagating absolute crop coords was fixed (i.e. if a crop had coords `(100, 100, 200, 200)` and another crop was made with coords [rel to previous crop] `(50, 50, 100, 100…
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### Type of the feature
- [ ] New function in `sqduipy.im`?
- [ ] New function in `squidpy.gr`?
- [ ] New function in `squidpy.pl`?
- [x] Change an existing functionality, such as default behavi…
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When building Astir, I'm running into the following issue on 3.6. I see in your documentation that 3.7 is suggested, but it also says that Astir works for 3.X. Is this the case, or is 3.7 or greater r…
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### Description
After updating pandas to 1.3.0, I started getting errors with `gr.ligrec`. Reinstalling 1.2.5 seemed to have solved this.
### Traceback
```pytb
--------------------------…
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Hi guys,
I have just tried the receptor/ligand implementation in squidpy and I think it's very cool (and fast)! One little issue is that the torus/dot distinction is not really intuitive in the plo…
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### Type of the feature
- [ ] New function in `sqduipy.im`?
- [ ] New function in `squidpy.gr`?
- [ ] New function in `squidpy.pl`?
- [ ] Change an existing functionality, such as default behavi…
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Hi,
Is it possible for you to comment on the run times of the tool at different number of cells? e.g. 5k? 10K etc. I have been trying with >10k cells and I think it would be a good option to downs…
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### Description
First off, thanks for making a great tool with tons of examples/tutorials! I noticed that `scapy.read_visium()` is referenced in the ["Import spatial data in AnnData and Squidpy" tuto…
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Hello! I just saw your preprint on this and was very excited to try. Can you shed some light on whether we can run this pipeline within R/Rstudio on our seurat objs? We currently have a few datasets t…
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### Type of the feature
- [ ] New function in `sqduipy.im`?
- [x] New function in `squidpy.gr`?
- [ ] New function in `squidpy.pl`?
- [ ] Change an existing functionality, such as default behavi…
giovp updated
3 years ago