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Technically MRtrix's tensor tracking isn't actually FACT, it's Euler integration. FACT implies nearest-neighbour interpolation.
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```
sct_dmri_moco -i /Volumes/users_hd2/tanguy/data/moco2/Grappa_noGrappa_crop_moco_roi.nii.gz -b /Volumes/users_hd2/tanguy/data/moco2/336610x2_bvecs.txt -z 1 -d 1 -a /Volumes/users_hd2/tanguy/data/33…
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@Garyfallidis and @alexis-roche - it seems that moving the transformations(e.g., syn) from dipy to nireg would now make some sense.
satra updated
8 years ago
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put export ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=X with X the maximum number of processor in the bashrc
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I put two images that can't be correctly corrected with sct_antsSliceRegularizedRegistration here:
/Volumes/folder_shared/Project_Moco/slice_reg_pb
In this example target iteralively averaged is wors…
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data:
$SCT_DATA_DIR/toronto_E19849/dmri/b0
syntax:
```
sct_segmentation_propagation -i b0.nii.gz -t t2
```
error:
```
WARNING: In /usr/local/ITK-static/include/ITK-4.5/itkGaussianOperator.hxx, li…
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- sct_apply_transfo.py
- sct_check_atlas_integrity.py and add details in doc.
- sct_check_dependences.py
- sct_concat_transfo.py
- sct_convert
- sct_convert_binary_to_trilinear.py
- sct_dmri_eddy_corr…
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data:
- running spinalcordtoolbox_data/paris_34/dmri
error:
```
Input File: dmri.nii.gz
Bvecs File: bvecs.txt
Traceback (most recent call last):
File "/Users/julien/code/spinalcordtoolbox/scripts/…
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e.g.:
```
sct_dmri_moco -g 0 -p hola -r 9 -v 19 -h
```
maybe the thing to do is to find the string "-h" in parser and immediately go to usage before setting other variables.