-
alevin (single-cell mode)
**Describe the bug**
I receive the following ERROR: Txp to Gene Map not found for 102926 transcripts.
**To Reproduce**
/usr/local/bin/salmon alevin -lISR -1 cells_CTT…
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/csoneson/alevinQC
Confirm the following by editin…
-
Dear alevin team, I was wondering, whether alevin is applicable to other scRNA-Seq platforms that are not droplet-based, but 3' amplified, like CEL-Seq2. My sequencing data consists of two fastq files…
-
Hello, guys.
I've read the previous posts regarding the issues with the Knee method and I'm having a hard time deciding on how to proceed with the barcode identification of some samples. I could real…
-
**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
I am using a version that was compiled in Trinity
module load conda/trinity-2.8.4
source activate trinity-2.8.…
-
I think it will be nice to see Alevin in scRNA tools catalogue https://www.scrna-tools.org
-
Alevin (single-cell mode):
After compiling from source, --celseq2 is still not recognized as a valid flag.
* salmon v0.11.3
* compiled from source
* reference: gencode.v28.transcripts…
-
**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
**Describe the bug**
A clear and concise description of what the bug is.
**To Reproduce**
Steps and data to…
-
**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
This issue is with salmon (bulk mode).
**Describe the bug**
The grch38 transcriptome has transcripts that …
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/mikelove/fishpond
Confirm the following by editin…