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---
id: cobrapy
version: 0.20.0
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_COBRApy/1dcc451274309526f98ce71a587dfc698160fa48/biosimulators.json
specificationsP…
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@fbergmann @matthiaskoenig I'm building up a list of necessary terms here
- kinetic (e.g., SBML)
- [x] time (urn:sedml:symbol:time)
- [x] concentration
- [x] amount
- [x] particle numbe…
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---
id: libsbmlsim
version: 1.4.0
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_LibSBMLSim/2a05dc6cab2bca141f42a538f0a7e36ed343c1cd/biosimulators.json
specifications…
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Basic email notifications are working, with a text only one sentence notification. This can be implemented as a html template to provide a better experience.
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---
id: copasi
version: 4.28.226
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_COPASI/9770b4c46932fd201e23f3f4c6afc4d6233df1b8/biosimulators.json
specificationsPatch…
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---
id: copasi
version: 4.29.227
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_COPASI/9770b4c46932fd201e23f3f4c6afc4d6233df1b8/biosimulators.json
specificationsPatch…
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To demonstrate the capabilities of the application to reviewers/users we should create an exported file of simulations ids.
These simulations can have various combinations of files and simulators to…
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---
id: tellurium
version: 2.2.0
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_tellurium/d098dc90a8615d2228617aa4eed9a0a6d48c69fc/biosimulators.json
specificationsPa…
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multiple sim run with vcell shows only 4 out of 6 sims:
https://run.biosimulations.org/simulations/5fdda8358b0da07b332ffa5a
both missing sims are the two cvode alg ones
running edited omex with s…
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---
id: bionetgen
version: 2.5.2
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_BioNetGen/914b4627c45b375f5da608d6b225bb1282a8f350/biosimulators.json
specificatio…