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I wanted to find out the memory requirements for the sentinel1ice program. But when I opened a huge image - S1A_EW_GRDH_1SDH_20180321T072153_20180321T072403_021110_024456_25A0.zip which is 2.2GB, I go…
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I've been running through [the alevin tutorial using 10X PBMC 4K data](https://combine-lab.github.io/alevin-tutorial/), eventually running this command template (Snakemake):
```
salmon alevin -lIS…
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**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
alevin
**Describe the bug**
Hello there, I just started to try `alevin` and really liked it.
Recently, I …
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Hello salmon team and @k3yavi,
I would like to have an idea of the sequencing saturation in my samples (10x) based on the alevin UMI deduplication default algorithm (that is, the fraction of duplicat…
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I've just started working in a single-cell genomics core facility, **alevin** looks really useful for our 10X runs!
But I also have a substantial number of samples processed with the CEL-Seq and CEL…
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I've had several occurrences recently where pipelines will ned detect when a job has finished. That is the cluster will have no jobs running, but the pipeline will still be running and not showing an …
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Hi,
I am trying to process scRNAseq Chromium data using alevin. I already have results from cellranger and I wanted to compare them with alevin.
I use the following command line
salmon alevin -…
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Alevin in Salmon v0.11.2
**Describe the bug**
When attempting to run Alevin on [https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/cd14_monocytes](url), with the 10x v1 wra…
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**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
salmon
**Describe the bug**
A clear and concise description of what the bug is.
I had an older version of s…
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Apologies for the previous empty post. I think I know how to do this now!
Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?
salmon
Describe the bug
I am gettin…
ghost updated
5 years ago