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### Describe the new feature or enhancement
Adds the ability to find minimum and maximum peaks not just negative and positive.
### Describe your proposed implementation
Append a simple condit…
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Is SEACR work with boardpeak calling, just like H3K27me3, H3K9me3 ?
in macs2, some parameter should be changed to call boardpeaks. while, I didn't see any explain about that in SEACR.
I try to…
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It is known that somehow with the current structure, in SR1 there is a ~10% chance that plugins computed in peaklets level (like `veto_interval` and `peaklets`) end up having different length when pro…
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Hi. I ran execute MACS2 as below:
`$macs2 callpeak -t ID1_sort.bam -c HALO_sort.bam -g 2.1e9 -B -f BAMPE -n ID1-HALO --outdir macs2-out 2> err-macs2.log`
I have the following outputs:
```
ID1-HA…
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## Run macs2 peaks using version 2.1.1.20160309
```
macs2 callpeak -f BAMPE -g mm -t bam_files/IP_sorted.bam -c bam_files/input_sorted.bam -n IP --outdir IP_prev_version/
```
## Results using vers…
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Hi,
I am currently working on running the DEIMoS commands within a Python script from the DEIMoS environment terminal and saving the relevant outputs in the working directory. This has worked well…
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Hi,
I am aware that MACS2 is designed for finding peaks using ChIP-Seq data. However, when I run MACS2 on RNA-Seq data using default parameters, it seems to work as I expected. Now my question is d…
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When Chebfun2 plots the phase portrait of a complex function it changes the color map. Thus for example the sequence
```
>> contourf(cheb.gallery2('peaks'))
>> plot(chebfun2(@(z) sin(z)))
>> cont…
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I want to modify the code of gqrx to automatically identify the peaks of LoRAWAN (Chirp Spread Signals) in the spectrum. Presently I am able to identify only peaks of NB sigs and same code is identify…
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Hello,
I am running into an error in call_peaks when I run the following command:
```
srun -p part1 --mem=1G --pty /bin/bash
bds_scr job_1 /home/username/job_1.log -s slurm /path/to/atac_dna…