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Thank you so much for your work on this project. I just came across experimental `aszarr` and `ZarrTiffStore` and am so excited! I'd written some one-off stores wrapping tifffile to read different pyr…
manzt updated
3 years ago
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Hi,
I am trying to go through the codes, and try it using my wsi images.
But when I input my wsi folder path and run 1_split.py just like:
`python code/1_split.py --all_wsi deepslide-master\HE_da…
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Hello, I trained this network on the CONSEP dataset and got the training weight of ea…
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I am able to import bioformats and javabridge, although `javabridge.start_vm(class_path=bioformats.JARS)` fails.
This error should be caught so that we can give a message to the user telling them how…
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Hello! Thanks for your code! But I've been meeting a confusing problem about path_mean and path_std. In the training process, I noticed the values of path_mean and path_std were confusing, but the m…
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In compute_stats.py, there is the following code
true_centroid = (true_info["inst_centroid"]).astype("float32")
true_inst_type = (true_info["inst_type"]).astype("int32")
But there…
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Hi, I just installed datashader hoping to use it, but it crashes my kernel when I try to import it both in a notebook and from the terminal. In the terminal I get the following message:
"Assertion…
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Hi @jcupitt
Fantastic work, really helped a lot.
My goal is to do the image registration for 2 mrxs image. So my workflow is 1: extract 2 Dapi channels of a lower level, usually level 4 or 5 to do…
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I'm trying to build my own training set for the model. What was the magnification ratio for the training dataset (40x, 20x, 10x)? I wasn't able to find this in the paper or documentation.
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I am training the model on an instance and I have made size of images as small as 48x48(97 in no.) and kept a batch size of 5,even then I am getting memory error. Can you please guide as to what was t…