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https://pachterlab.github.io/kallisto/about.html
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When looking at code like `open Biokepi.Edsl.Library.Input` and trying to figure out where it comes from, it's not the simplest path from there to `/src/pipeline_edsl/pipeline_library.ml` and the subm…
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If you are using `(^)` on `Exp`s you get the error:
```
**** Exception: Prelude.Ord.compare applied to EDSL types
```
See https://gist.github.com/2768391 for an example.
My guess is that you are in…
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Apparently, [flex does not support capture groups](http://stackoverflow.com/questions/6051196/get-groups-with-flex). Wouldn't this be a particularly useful feature?
e.g. rather than having to writ…
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The MG Drasil code in the SteveImpl branch is working for modules and methods. We should now add the other sections of a typical module guide.
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In [Pipeline](https://github.com/hammerlab/biokepi/blob/master/src/lib/pipeline.ml#L90)
1. The name of this type makes more sense as a noun, fastq_input.
2. `Paired_end should contain (File.t \* File.…
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This lets us do nice things with the AST later, in `wrap_x_nodes`, for example.
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We should be able to run BWA-mem on 24 cores using `bwa mem -t 24` (see http://bio-bwa.sourceforge.net/bwa.shtml#3)
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