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Hi everyone, I am trying to use the pyscenic workflow to infer grn on my 10X scRNA dataset. I completely followed the demonstration workflow posted on SCENICprotocol cancer data sets using SKCM scRNA …
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Hi!
First, I must congratulate you on successfully _breaching_ ( :D ) MD's data file formats. As someone who spent a lot of time trying to figure what's what in HR's .drm files and how to make sens…
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At first, I was going to train a BERT model from scratch with the animal transcription factor proteins I had, but I was not successful. While doing research, I came across your ProteinBERT study and a…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/FertigLab/domino2
Confirm the following by editin…
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The current definition for silencing by RNA-directed DNA methylation GO:0080188 is for an siRNA-guided process:
"A small RNA-based gene silencing process in which small interfering RNAs (siRNAs) gui…
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see for eg first line of pombe file
PomBase SPAC1002.04c taf11 GO:0006357 GO_REF:0000024 ISO SGD:S000004477 C transcription factor TFIID complex subunit Taf11 (predicted) protein taxon:4896 200…
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There is a new interest in alternative recruitment methods besides Amazon Mechanical Turk in response to the changing prices (https://requester.mturk.com/pricing). This has been a possible area of de…
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Hi Jungjee,
Thanks for sharing your great work!
Could you please share the code you used to create the test_list for a new test dataset? For example, if i want to test using TIMIT corpus.
head …
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Without FMA, many numerical algorithms are impossible to implement with the performance or accuracy attainable if FMA exists. This issue can be considered an elaboration of the FMA part of the discuss…
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* **InterPro ID / label**
GO:0006355 | regulation of DNA-templated transcription
* **Example sequences with problematic annotation (ID + gene/protein name):**
RNA polymerase II transcriptio…