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Hi,
Thanks so much for your contribution to this function. I would like to perform a pairwise adonis test with phyloseq object and a bray distance matrix but I have some problems when I ran the co…
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A new term "cecal content" used in biosamples
label: cecal content
definition: Undigested food material, microbiota, and other materials found in the cecum pouch of the intestine.
Definition sour…
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Hello
I am running concoct command:
concoct --composition_file contigs_10K.fa --coverage_file coverage_table.tsv -b concoct_output/**
which generate this error:
Up and running. Check /lustre…
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I am reading this paper: Bioconductor Workflow for Microbiome Data Analysis: from raw reads to community analyses, but I did not able to understand a few things:
1) Do we need to do these filtering…
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Hello,
First of all thank you for all of your hard work developing such an informative and intuitive tool.
I have been successful in running the LEfSE analyses for some of my data, but unfortunat…
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We don't scrape the full snippet of a search.
Public links: [Playground](ht…
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We should have some exercises about all major chapters / functionalities.
List systematically what is missing and create issue/issues.
At least:
- dbRDA exercises will require an update
- calc…
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I find for most of the work I do I use `psmelt` to generate dataframes before doing any plotting or manipulation. However, I have a dataset that need ordination plots and I've run into an issue trying…
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Hi @hbckleikamp,
I'm eager to use your scripts to build a diamond database, but when I use `python GTDB_protein_download.py `, I only get `retry
retry
retry`. And nothing more happens...
Can y…
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Hello Tang,
Can I use your pipeline to predict metabolome from Picrust2 predicted KO metagenomes for which I do not have any paired data?