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Hi biotools!
Visually I struggle with reading some things on bio.tools without increasing my zoom level many times. Fonts are lightened and made small in several places that renders them less reada…
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unfortunately a large fraction of the bioinformatics community will be put off by RDF.
Luckily it's very easy to use JSON-LD as a trojan horse here. The bioinformatics community needs a JSON succes…
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I am involved in MIxS which has developed many packages over the years for different sample types and beyond.
For example for soil: https://genomicsstandardsconsortium.github.io/mixs/soil/index.htm…
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Synthea supports the ability to filter the patient records that are exported, using a module built with the [Generic Module Framework](https://github.com/synthetichealth/synthea/wiki/Generic-Module-Fr…
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Dear Hugh,
Dear all,
I observe an SR319 with the following query:
`PREFIX up:http://purl.uniprot.org/core/ PREFIX keywords:http://purl.uniprot.org/keywords/ PREFIX uniprotkb:http://purl.uniprot…
tlomb updated
2 years ago
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I am trying to run the following federated query on a virtuoso 7.1 instance:
SELECT ?pwIdentifier ?disease ?pwTitle WHERE {
SERVICE http://beta.sparql.uniprot.org/{
?protein up:annotation ?annota…
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There are at least 2 different use-cases that justify different access routes for data in Galaxy.
1) a job needs to read the data, and therefore most often from a POSIX filesystem (exceptions exist…
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There is no group associated to RNA profile
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Each data file need to be name correctly and documentation should be updated to data.R
- [ ] GEX5line.txt
- [ ] InputData_for_Survival_v1.txt
- [ ] L29_vitro_Control_vs_knockdown_diff.txt
- [ ] Limma.…
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```sparql
PREFIX up:
PREFIX keywords:
PREFIX uniprotkb:
PREFIX taxon:
PREFIX ec:
PREFIX rdf:
PREFIX rdfs:
PREFIX skos:
PREFIX owl:
PREFIX bibo:
PREFIX dc:
PREFIX xsd:
PREFIX f…