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Hi, I am having some problems inferencing (producing segmentation masks) the Singularity file for DiffTumor, [difftumor_final.sif](https://huggingface.co/qicq1c/DiffTumor/blob/main/difftumor_final.sif…
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I asked a bunch of people. @FrederikBaumgarten got Loïc Schneider to send some images. I uploaded those to the lab google drive under tree rings (and included the email there).
Some more replies:
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Thanks for the nice toolkit. Is there documentation to get started on using PTK in batch mode? I would like to run airway segmentation on a bunch of CT scans without going through the GUI.
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liver, kidneys and spleen MRI scans, 1270
images, 20 training cases
Kavur, A.E., Selver, M.A., Dicleı¸s, O., Bar, M., Gezer, N.S.: CHAOS - Combined
(CT-MR) healthy abdominal organ segmentation ch…
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Hi there,
We notice that the number of the internal validation dataset you mention in the figure has 1564 scans, while your proposed validation set in HF and in the paper has 1304 cases/3039 scans.…
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Hello,
We are currently working on a research project involving whole-heart segmentation from MRI scans.
I've noticed that you provide a pre-trained CNN model for CT medical image segmentation.
M…
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Hi, I have a little question about your code for the preprocessing. In your `FileMunging.py,` for every patient, you keep only 1 scan and choose the 5mm slice scan in priority . May I ask you why you …
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Dear Author,
I am very interested in your work. I have successfully cloned and set up the project, but I noticed that test data is not included. To better understand and validate the performance of…
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I would very much like to replicate your work.This error occurred when I started training after loading the dataset successfully.
ValueError: Expected target size (1. 128. 160,960），got torch.size([1.…
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Hi,
I am doing affine registration of two CT scans. The obtained images look aligned. However, when I apply the obtained transformation to the manual points on fixed image using TransformixImageFil…