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Hi,
I am trying to download the microbial genome using repophlan_get_microbes.py script on iMac. But it is running from last 2 days and still keep running, could you please suggest how many total s…
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PTHR10003 Info - IBA to term GO:0005507 for node PTN002224320 with species Mycobacterium tuberculosis negates 'NOT' experimental evidence for term GO:0046872.
PTHR10890 Info - IBA to term GO:0004817 …
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zqshu updated
8 years ago
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Following the suggestion of @jhpoelen , I'm opening a new issue to discuss the questions about adding taxonomic expertise to the profiles/maps raised by @iimog
"I really like the suggestion to fil…
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I've been trying to run trinity on my reads for days now, but could use some help. I am trying to run a script called `run trinity.pl` (code in screenshot) which requires trinity to be installed as an…
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Hi pySCENIC team,
Thank you for providing a great tool. I am running pyscenic using my original zebrafish data. However, I got an empty file output (reg.csv) from `pyscenic ctx`, which is a ve…
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Hi!
I wrote a [quick-and-dirty script (`orthogroup_to_gene_name.py`)](https://github.com/MrTomRod/orthofinder-tools) that takes `Orthogroups.tsv` and turns it into `Orthogroup_BestNames.tsv`. This …
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Hi,
I was running halPhyloPMP.py, the command is
halPhyloPMP.py --numProc 100 ../504_way.fish.hal Danio_rerio ../step2/all.mod pick.Danio.wig --targetGenomes Arapaima_gigas,Scleropages_formosus,Meg…
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The logic for querying, adding, and handling taxonomic information from WoRMS exists since March 2023 via [`update_taxa.py`](https://github.com/bruvellu/cifonauta/blob/develop/meta/management/commands…
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### A clear and concise description of what the bug is.
I assumed that for most species, if not all, there would be a single source, and a more or less standard format...
What differences there …