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# Linked-Reads QC: Summarize sequencing library quality of 10x Genomics Chromium linked reads
The goal of this project is to develop a software tool to quickly report on the quality of a 10x Genomi…
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Hi Nick!
I hope you are doing great! I've been working with malaria amplicon deep sequencing using cpmp, but I've encountered a few issues whenever I customize parameters using the setupTarAmpAnaly…
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I have some sets of dual indexed fungal ITS amplicon pools from specimens. One is 288 specimens and the other is 480 specimens if they would be helpful at all in developing methods.
Could also dis…
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Hi,
I am currently trying to test spectralis for de novo peptide sequencing of DDA datasets, and I currently have a problem.
While it is possible to get it running on a standard PC with open web con…
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# Abstract
Methods to represent multiple spectra
Spectral library searching offers a sensitive yet fast method to match spectra from mass spectrometry-based proteomics experiments. The techn…
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Hi, we are trying to run raven 1.6.0 on x86_64, RHEL 7.9
we are not seeing any output with the following:
raven all_subreads.fq.gz interleaved.fq.gz
see attached, also log file..
Thanks for …
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Hello,
Thank you so much for creating Vireo, it’s been very useful for us!
I am currently using cellsnp-lite and vireo to demultiplex my single cell snRNA-seq data (pool of 96 donors, all donors …
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Hi,
I get de novo assembled E. coli genomes from a sequencing provider that we use in FASTA format.
I'd like to call mutations in those assembled genomes.
Since Breseq now can handle nanopore rea…
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**[Original report](https://bitbucket.org/whatshap/whatshap/issue/82) by Shilpa Garg (Bitbucket: [gargsh](https://bitbucket.org/gargsh), ).**
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Implement the f…
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I am trying to download sequence data from _E. coli_ samples within the state of Washington - it's about 1283 sequences, which I know is a lot. The problem that I am running into is that entrez_search…