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I am trying to run dti_fit_csd. Right now I am seeing the following error message.
```
/usr/local/lib/python2.7/dist-packages/h5py/__init__.py:36: FutureWarning: Conversion of the second argument …
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**Which library is the hook for?**
`xnat` (https://xnat.readthedocs.io/en/latest/)
**Have you gotten the library to work with pyinstaller?**
Yes, but it needs several hidden imports. (Just '-…
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_From @gauvinalexandre on April 24, 2017 13:22_
I have tested this with VTK 5.8 and the bugs does not happen, so it seems to be version specific. Here is the simple code snippet to reproduce de bug:
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## Description
The positional arguments in the CLI documentation are not rendered in such a way that facilitates the reading; contrary to the optional argument list, where the argument name, type a…
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## Description
Manjon 2013 paper "Diffusion Weighted Image Denoising Using Overcomplete Local PCA" provides a method to estimate noise in a diffusion weighted image series using PCA. I believe that t…
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Rather than duplicating their functions, we should wrap them lightly (including the docs). Then nidata simply works as an aggregator in many case--yay!
There should also be tests to make sure that we…
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A small issue but my import statements get pretty lengthy by importing every function at the top. `mne` implemented pretty recently `lazy_loader` so that you can do `import dipy` and then `dipy.align.…
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We have started integrating the TRX file format into DIPY. The goal is to remove entirely the dependence of TRX on DIPY, while retaining much of the useful functionality in the many scripts and functi…
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There are some inconsistencies, I guess they did not cause much problem with the default settings, but the indexing is incorrect for the patch comparison.
For example, this one indexes by j,i,k, an…
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Hey!
The mandatory argument `number_coils` in scil_denoising_nlmeans.py is never used!
- We verify if it is >0 to decide between Rician and Gaussian. But you can put 1, 2, 4, it does change any…