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Hi.
I am using tensorqtl to perform interaction cis-QTL mapping. I believe that the interaction model simply adds interaction terms. Even if the interactions are different, the snp-gene pairs test…
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Here is the log:
Starting log...
[2023-06-13 04:54:27 - INFO] Detecting 1 populations for fine-mapping.
[2023-06-13 04:54:27 - INFO] As a result, running single-population FOCUS.
[2023-06-13 04:54…
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Hi Francois,
Could you clarify the expected file format for the --interaction parameter when performing interaction tests? I tried to use the exact same format as the [example](https://personal.bro…
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If I take GEUVADIS genes on chromosome 1 which have an annotation in ENSEMBL 75, I get 1564 genes.
If I then perform a permutation pass in 100 chunks using GEUVADIS genotypes on chromosome 1, I onl…
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Hello,
I posted this issue in @francois-a's package `fastqtl`, but since tensorqtl is similar, I'm writing the same question here:
I'm attempting to replicate the gtex-pipeline using scripts fro…
vkp3 updated
10 months ago
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Hi,
Thanks for developing this awesome tool. I am confused with pval_nominal_threshold column outputted by post.calculate_qvalues function. Is this column a significant threshold? Can I filter sig…
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Hi FOCUS team,
Thank for developing this useful tool.
I got the following error when I ran focus finemap.
I know that the same issue was reported at #41 , but it was already closed without any …
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Hi Mike,
Do you think it would be possible/interesting to modify MRLocus to use log Bayes factors (lbf's) computed by SuSiE for the colocalisation part? For the next eQTL Catalogue release we are p…
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Hi ~
I'm run `conditionally independent QTLs` model to find multiple independent signals of a eGene.
it ran successfully and got the result. But when I checked the number of eGene, I found that on…