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Dear Nanoporetech,
I am having an issue running this. I have altered the config.yaml (pasted below). I read an another issue that full paths were required so I added these, but have removed identi…
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i check all of requirements.txt, so what's wrong?
isoquant.py --test
commond line: ~/mambaforge/envs/isoquant/bin/isoquant.py --test
=== Running in test mode ===
Any other option is ignored
202…
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Is there a way to adapt the pipeline for nonhuman organisms?
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Hello. I am trying to analyze a DNA sequence fasta file for COGs. Is it possible to use a fasta file for that purpose? The file is aligned with gene NCBI IDs.
Example command:
`BioSAK COG2020 -m N…
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## Description of the bug
I'm not sure if this is a bug or by design. There are parameters to override the default feature names in the host and pathogen annotations, but I'm not sure if they are b…
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## Anti-microbial peptides
- [ ] LABiocin ([2019](https://doi.org/10.1016/j.ijantimicag.2019.07.012)). They require to make an account that takes some time to be validated and then you make a special…
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i am seeing the error:
```
Error, cmd: bash -c "set -euxo pipefail; cat /refbuild/GRCh37/starfusion/../annotation/Homo_sapiens.GRCh37.75.gtf | egrep 'IG_V_gene|IG_C_gene|IG_D_gene|IG_J_gene' | awk '…
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### Description of the bug
Hello, I am a co-worker of olgabot and this issue is following [issue 196](https://github.com/nf-core/differentialabundance/issues/196). Running the nf-core/differentialabu…
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**Copy and paste the exact command you tried to run**
flair collapse -g /cluster/pixstor/slotkinr-lab/mkramer/annotations/arabidopsis/At_v2/At_array.v2.RUBY.fa -q ruby_round1_merge.non_pA_all_correct…
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Hi,
I have different InterProScan results between running GAAS and running InterProScan manually, with the same input files.
I do not see any difference in the input arguments. As you know the bac…