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### Description
When implementing the hoomd.md.external.field.Periodic() force on a two dimensional system, the forces are NaN due to a divide by zero error in the evalForceEnergyAndVirial() method. …
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### Description
Add `default_gamma` and `default_gamma_r` arguments to the constructors of:
* `hoomd.md.methods.rattle.Brownian`
* `hoomd.md.methods.rattle.Langevin`
* `hoomd.md.methods.rattle.Ove…
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### Description
HOOMD segfaults when running the HPMC unit tests on crusher. To reproduce, build HOOMD using the crusher environment (https://github.com/glotzerlab/software/pull/263) in RelWithDebInf…
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### Description
There is a strong push in the EU community to have data that is so-called FAIR -- findable, accessible, interoperable and reusable. In Germany, the push is institutional; the DFG best…
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### Description
When using `sim.state.cpu_local_snapshot`, it is changing particle typeid of random particles rather than of what I have defined. For example in the test script, it should change part…
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### Description
The [bond python class](https://github.com/glotzerlab/hoomd-blue/blob/trunk-patch/hoomd/md/bond.py) isn't working with plugins because it is missing the string that let's you redef…
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Matscipy neighbourlist (from @davkovacs `matscipy` branch) is _much_ faster: 5 seconds vs 5 HOURS on the graph construction step for 10 000 small molecules.
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**Submitting author:** @marjanalbouye (Marjan Albooyeh)
**Repository:** https://github.com/cmelab/flowerMD
**Branch with paper.md** (empty if default branch):
**Version:** 1.1.1
**Editor:** @lucydot
…
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### Description
There are situations where it is desirable to ramp up energy prefactors during a simulation. For example, to gradually "turn on" a pair interaction.
### Proposed solution
The user …
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## Description
In order to link with openmpi these arguments are added to cmake:
```
-DMPIEXEC_EXECUTABLE:FILEPATH="/usr/local/mpi/openmpi/bin/mpiexec" -DMPI_HOME:PATH="/usr/local/mpi/openmpi"
…