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I agree with @adrianveres [here](https://twitter.com/adrian_veres_/status/1105969701094674432?s=11): GLM-PCA by @willtownes seems like a rigorous way to deal with zero inflation, since we use PCA as b…
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The following is a slightly modification to the DeepIV notebook, but it no longer works. I guess it is because of the fact that I increased the max value of the X and T, which caused the overflow some…
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Hey,
umx is great, thank you very much. I have a question: Will you extend umx to support "basic" family models? That is, MZ and DZ twins, possibly their parents and maybe one non-twin sibling. My …
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The current simulation seems to only allow us to fix the hyper parameters of the network and whenever we simulate, it will first generate a new network and then simulate the covariates.
However, we…
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Post questions here for this week's fundamental readings: Grimmer, Justin, Molly Roberts, Brandon Stewart. 2022. Text as Data. Princeton University Press: Chapters 10, 12, 6, 13 —“Principles of Discov…
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Hello~, if i want to use the trained model to predict the gene expressions, which function should i use, and could you kindly give some explanations about the parameters of the function?
Thanks~
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Above are histograms of posterior probability distri…
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Hi! I have been trying to map data to scvi-integrated embeddings using scArches, and have noticed that for the two scVI-based reference models I have used, setting the `max_kl_weight` parameter differ…
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Post questions here for this week's fundamental readings:
J. Evans and B. Desikan. 2022. “Deep Learning?” and “Deep Neural network models of text”, Thinking with Deep Learning, chapter 1, 9
Ash…
lkcao updated
8 months ago
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Hello,
Thanks for making the methods of your research publicly available. Despite following your instructions, namely installing the packages `INLA`,` ggplot2`, `dplyr`, `gridExtra` , and creatin…