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# Description
This issue will be used to update the GT segmentation names to be in conformity with the [new conventions](https://intranet.neuro.polymtl.ca/data/dataset-curation.html#label-names).
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Projects steps :
- Literature review of SOTA 2D detection models
- Manual segmentation of 20 subjects
- Data pre-processing (train, valid, test)
- Model building
- Training of the model
- Defin…
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## Context
The Montreal team would like to share spinal cord lesion segmentation obtained by @plbenveniste to the Toronto team (@leelisae) for the purpose of linking spinal cord lesion load with ad…
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Hi,
First of all, I'd like to say that I'm a new user of dcmqi. So I might be doing something wrong, however, let me explain the issue I'm having below:
I have a White Matter Lesion Segmentatio…
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_Originally posted by @jcohenadad in https://github.com/spinalcordtoolbox/spinalcordtoolbox/pull/4042#pullrequestreview-1308428736_
> We should choose another output suffix for the inference. Curre…
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Similar to https://github.com/spinalcordtoolbox/spinalcordtoolbox/issues/3612, this issue is used to keep track of progress on feedback/ideas received from the 2021 SCT Course:
### Planning/organiz…
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## Background
The `sct_qc` command allows users to generate QC reports in a flexible way, compared to running scripts with the `-qc` option. To select a QC report, we use the `-p` (`process`) argum…
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This issue is about tracking the status of minor TODOs being in the python script and/or in the README file text.
- [ ] An example could be to add a flag button to flag a case and save that the cas…
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This issue discusses differences in the implementation of the Dice Loss with and without the smoothing term.
## Background why opening this issue/discussion
tl;dr:
- nnunetv2 `nnUNetTrainerDice…
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In the original training data, https://github.com/muschellij2/lesion_segmentation/blob/master/FLEXCONN_Train.py#L78 and https://github.com/muschellij2/lesion_segmentation/blob/master/FLEXCONN_Train.py…