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sorting by title in https://www.openresearch.org/wiki/List_of_Event_series shows the problem
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I'm leaving a node open as a volunteer, and getting a fair number of terminations due to reaching max offset.
They look like:
```
Downloading part1 for device 01d5dd9a44452d0935a661e7733a6f74
…
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I'm trying to have superFreq output to an absolute path rather than using the base path where the bam files for the quality contorl samples are. The line below seems to force creation of the R and plo…
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I'm fairly confused as to why these terms were renamed at all, much less renamed without maintaining the old term as a synonym. I strongly believe the old terms ought be exact synonyms.
The embryon…
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Hi everyone,
I used the TCGA database for melanoma to perform DEseq2 analysis. After I performed the lfcshrinkage command, my enhanced volcano plot looks very weird.
Does anybody have an idea?
…
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Hello,
I am a relatively new user of superFreq (thanks for this tool btw), and i'm principally interested in using its CNA analysis part. I already started to use superFreq on some data to compare …
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[FluxCoordToCartesian.evaluate](https://github.com/cherab/core/blob/e83bb8cf1ba19d0a645b774c460347ef302e2926/cherab/tools/equilibrium/efit.pyx#L509) returns a fixed value if the coordinate is outside …
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I don't currently see this as an option, but it would be nice to be able to separate the results table into up- and down-regulated genes. Currently it seems I would need to compute my own LFCs. Can yo…
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Hello Christoffer,
First off, thank you so much for developing a comprehensive tool with some form of standardization and provides functional QC metrics! As your paper had stated, it is definitely …
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Looking at the [`glmGamPoi` test case](https://github.com/mikelove/DESeq2/blob/master/tests/testthat/test_LRT.R#L14-L21):
```r
dds