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So there is a nice test for checking that input id are in the reference list. If an id isn't in the ref list, you get the message "ERROR: requested input id {line} not found in ref_id_list" but the co…
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Hello Daniel,
I am in the process of creating auto-update scripts for all the nodes with hetio, and in order to do that, I will need a copy of the most up-to-date modzs.gctx file. I know that GSEA …
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Though https://info.cfde.cloud/info/standards/C2M2 has a lot of information; someone who is completely clueless about the C2M2 will not be able to assemble a C2M2 data package with the provided inform…
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deploy -f reports:
deploy: "curl -f http://lincs.hms.harvard.edu/cgi-bin/cleanup.cgi" failed
- this file has been removed from the directory
- not sure it was doing anything anyway
- will be obsolete…
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for display and storage, these fields will be strings
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The file one gets by clicking on the [Comma-separated (CSV)] button of a datasets search results page ([for example](https://lincs.hms.harvard.edu/db/datasets/?search=kinomescan&extra_form_shown=&data…
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Thank you for your work!
In the paper, you said "To make cross-platform comparisons compatible, we take the PubChem ID as the identifier of drugs across Drugbank and LINCS database." I don't understa…
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I download the pre-trained model from https://maayanlab.cloud/sigcom-lincs/#/Download
I found L1000_to_RNAseq_pipeline_training.ipynb said the input is Level 3 of L1000.
I used the DeepCE model…
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Related to:
https://github.com/cytomining/DeepProfiler/issues/264
I am not sure if this is an issue stemming from CellProfiler output?
But why do we not sort the location files in the same way…
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@gwaygenomics said this https://github.com/broadinstitute/lincs-cell-painting/pull/60#issuecomment-803462187
> We might at some point also consider moving from gitLFS to dvc. It was _super_ easy to…