-
-
-
Hi @qianjiaqiang
I have some queries regarding Cluster defination:
You periviously mentioned that clusters are basically generated by `louvain algorithm` BUT in sense of genetics what exactly …
-
Hi @LuckyMD, I've been reprocessing some old data using your single cell tutorial workflow and have a best practices question (I am not sure if this is the correct place for this, or if this should be…
-
- [ x] I have checked that this issue has not already been reported.
- [ ] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (optional) I have confirmed this bug exists on the …
-
Hi,
I tried using `format_database.pl` to format the `repbase` data. I basically concatenated all the references.
`cat RepBase21.01.fasta/*.ref RepBase21.01.fasta/appendix/*.ref > repbase_all.fasta…
-
Hi, It seems Annoy algorithm in `bluster` cannot accelerate the clustering process. the `uncorrected_sce` is a `SingleCellExperiment` object with a `reducedDimNames` slot `PCA` which has a dim (`[1] 1…
-
Hi,
Thank you very much for this.
I was using cytofkit before a lot in the past and stopped using once it was not supported anymore. I started to see some issue as for example the tSNE results wer…
-
Hi @ZunsongHu,
I was testing the MD-ALL shiny app using the multiple sample mode combining the MEF2D and PAX5 alt sample given. It failed.
Running the samples in the single sample mode works fine.…
dade7 updated
1 month ago
-
Hi,
I have tested the new Monocle 3alpha build on Windows. So far it works. The only problem is, that some functions that rely on python will invoke the call `system("which python", internal = T)`, …
PGuen updated
5 years ago