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This is part of [the JOSS review](https://github.com/openjournals/joss-reviews/issues/5388).
Following https://nomad-lab.eu/prod/v1/docs/develop/setup.html#install-nomad, running the script after p…
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**Setup:**
1. I load a molecule with MDAnalysis from a PDB file.
2. Then I [translate](https://docs.mdanalysis.org/2.6.1/documentation_pages/transformations/translate.html#MDAnalysis.transformatio…
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Just thought it would be a good idea to 'bookmark' this idea from one of the hackathon teams I was coaching a bit at the recent CECAM 2015 workshop in Germany. I hope they will follow through with a p…
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@mnmelo what do you think about forking mdreader into the MDAnalysis org? In this way it gains visibility and MDAnalysis users can discover it?
Ideally, you'd push changes to the fork, too, so tha…
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## Expected behavior ##
From a skim over the docs and code my impression was that `streamlines.generate_streamlines` would incorporate all frames between `start_frame` and `end_frame` in the dx…
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The MDAKit registry https://mdakits.mdanalysis.org/ is now in beta and MDSAPT would make for an excellent "official" MDAKit, given that it was one of the very first inofficial ones. MDSAPT is already …
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## Is your feature request related to a problem? ##
As detailed in https://github.com/MDAnalysis/mdanalysis/pull/2525#issuecomment-608264856 several waterdynamics methods currently have an inclusiv…
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Hello
I have installed Pycontact with the mentioned installation commands but I got the following error and I have Python 3 installed in my laptop also I can not find the zip file (pycontact-develop…
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I encountered this error when I ran `python3 ./main_work.py`:
```
Traceback (most recent call last):
File "./config.py", line 61, in
get_index_list_with_selection_statement('../resources/al…
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Hi,
I ran a lipid bilayer simulation for 500 ns and when I am trying to calculate order parameter for POPC for a trajectory beginning from the simulation it runs fine. But I want to consider the las…