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Hi, Allan.
Just reporting that I have been facing some difficulties to calculate alkalinity values using the Extended UNIQUAC. The other models I have tested worked fine (HKF and Pitzer, basically)…
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Hi,
I am wondering if Aquila is applicable to genomes from non-model insect species, or is it meant only for human genomes? Assuming I can generate uniqueness map for the reference of my non-model sp…
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### Description of the bug
Hi,
I am running rnavar on a non-model organims species and I don't have vcf annotations or calibration for it. The pipeline runs after the mapping stage and it does not g…
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This is a question about some of the life history parameters that the GUM package spits out at outputs. While preparing input data for a projection model, I ran a single fishery's catch history and th…
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Hi,
It seems that octopus open one temporary vcf file per contigs/scaffolds. For many non-model species, there are many contigs/scaffolds in their reference genome, for example https://www.ncbi.nlm…
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Hi Diener,
would it possible to provide detailed description on the procedures that generated those GEM reference database? I found it quite useful while I am hesitating to use it in my manuscript wi…
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Hello,
First, thanks for creating MoDentify! It looks like an amazing tool and I am excited to use it!
I have a dataset (basically peak intensity matrix) for a non-model species. Since it is non…
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Hello,
I'm trying to run a RERconverge analysis on a set of gene trees from non-model organisms that were derived from a tree-based ortolog extraction algorithm, so most gene trees do not have all th…
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### 📝 Description of the feature
The settings API calls to create new mixtures for the species transport model should be made consistent with that of the materials change/create API. Currently, it …
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I want to couple PHREEQC with a 3D groundwater flow and solute transport model. The 3D groundwater flow and solute transport model has API that should make this possible.
Basically I want to do th…