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- [ ] Drag and drop a `.zattrs` file onto the browser to validate
- [ ] Button to copy JSON to clipboard
- [x] Links from zattrs sections to the spec. e.g. https://ngff.openmicroscopy.org/0.4/ind…
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This currently raises `NotImplementedError`'s here and there in the tasks, but it should be supported. Note that it part of the OME-NGFF specs, but it's not supported by `ome-zarr` reader.
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This is a preliminary proposal and discussion for axes and coordinate transformations. For more details see:
* [this early version of the specification](https://github.com/bogovicj/ngff/blob/coord-tr…
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Images are not always scale pyramids, but single-image arrays also benefit from some of the metadata we apply to multiscale groups. I suppose these are implicitly supported in the spec ("just add a `c…
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- [x] MUST DO
- [x] Finalize axes & transformations #85
- [x] Update the example data (e.g. in https://github.com/ome/ome-ngff-prototypes) for changes in #85
- [x] Finalize support in ome-z…
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Hello all,
Thanks for this amazing work! Having interactive image browing within a notebook is really something that helps a lot!
I am wondering whether you are planning on adding some other type…
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# NGFF generation
Generation takes place on `pilot-zarr1-dev` or `pilot-zarr2-dev` machines.
We need to generate NGFF data with https://github.com/IDR/bioformats2raw/releases/tag/v0.6.0-24 which has…
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We have been working on porting the Zarrita API into the `v3` branch here. Zarrita did not include any synchronization. Options going forward are:
1. drop the synchronization api, it seems to be ra…
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The current plugin effectively supports [multiscale images as per the ome-ngff spec](https://ngff.openmicroscopy.org/0.4/#image-layout). We should also support [high-content screening images](https://…
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From OME discussion:
immediate next jobs:
- [x] 'source' to proper URL
- [x] add license, description to URLs list (use css table) See #2
- [x] add necessary build configs (as on ome-ngff-valid…