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Hi,
I am trying to run SpatialPCA on the Slide-Seq V2 dataset in the tutorial. I am unable to create the SpatialDataObject using the Spatially variable genes computed using Sparkx.
# Code:
loa…
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Hi, all
I'm just a fresh man using Seurat. when I run tutorial code step by step, an error occurred in SCTransform function as following:
> library(Seurat)
library(SeuratData)`
library(Seu…
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I am performing routine scRNAseq analysis on a single cell dataset using the scTransform framework. and have run into a weird issue. Briefly, running the code below exactly reproduces the results of …
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I am analyzing 9 Visium samples that need to be integrated and I want to use SCTransform normalization. In attempting to adapt the vignette https://satijalab.org/seurat/articles/integration_introd…
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This is meant to address #7249. The doc outlines the pros and cons of various approaches React could use to handle attributes and properties on custom elements.
# TOC/Summary
- Background
- Pro…
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Hi @kdkorthauer
I am not sure what this error means.
```
Assuming the test covariate group is a factor.
Condition: main2 vs main1
Adjusting for covariate (s): batch
Parallelizing using 10 …
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I am comparing Integration methods using the `IntegrateLayers()` function and am running into an Error when trying to use the scVI method. The other methods (harmony, rpca and cca) I have tried work f…
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Hi! Sorry for double posting the issue in sctransform and here. According to the issue#124 in satijalab/sctransform (https://github.com/satijalab/sctransform/issues/124), I am trying to increase the n…
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Hello,
Thank you so much for your tool! Can you please help me figure out why I am getting the error "Error in data.frame(g.fac = rep(pDat[, colnames(design)[coeff[1]]], each = length(ix)), : argum…
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Hi,
When I try to use SCTransform to normalise our CosMx data, here comes to the error:
Error in vst_out_offset[all_poisson_genes, col] : subscript out of bounds
code and session information ar…