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**Submitting author:** @lavrovaliz (Elizaveta Lavrova)
**Repository:** https://github.com/primakov/precision-medicine-toolbox
**Branch with paper.md** (empty if default branch):
**Version:** 0.11
**E…
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Hi there,
thanks for the great challenge! I am having some trouble with getting the baseline U-Net Docker container to run. I have modified nothing and am just running the following command:
`./…
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Example: https://mila.quebec/en/publications/
It would be nice to reuse the same code as in the Mila website. Not sure if that's 'easily' possible via RTD
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Generation of Segmentation (SEG) images doesn't work for mammography images due to required tags that are optional and usually not present. In particular: FrameOfReferenceUID, SliceThicknes, ImageOrie…
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## Description
All UFS P7c runs (using workflow) failed at day 18 (using 300s for fv3) or day 13(using 225s for fv3), most likely due to memory leak.
### To Reproduce:
git clone https://github.…
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Hi,
Can you tell me how to convert the segmentation from XML format to NIFTI files?
Regards,
Jianhong
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Import from BIDS-manager database:
- Anatomy files: all supported imaging modalities (T1, T2, FLAIR, CT, PET), pre/post/postop
- FreeSurfer segmentation: from `/derivatives/freesurfer`
- GADO true …
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For the last few days I've been trying to get C-GET working, without much luck.
I've read both this and your fork of go-dicom pretty solidly and am still having issues.
I'm currently running aga…
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Hi,
I am interested in trying out your registration algorithm as an initialization for rectal registration. (I would like to transfer rectal tumor segmentations to PET/CT)
Compiling the algorithm…
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@bcli4d
In the absence of some direct method for identifying derived images, I am working on the following workaround to tabulate 3rd party data in each data collection:
1. Create a (BQ) table, 'th…