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Currently, free energy is computed by the edges who query the connected nodes. However, deterministic nodes have no free energy.
This becomes a problem in equality nodes. Suppose we have 3 edges x…
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- IM needs to be annotated precursor from ID (check if sage outputs it and annotate in idXML!)
**update: annotated in "ion_mobility" column of pin or result file**
Done: check here if column exists:…
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Dear STM community,
I'm wondering whether it is possible to "merge" two topics into one as they correlate a lot or because I think that the topics align much. I would like to estimate an effect for…
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[Disclosure_data.csv](https://github.com/user-attachments/files/16560054/Disclosure_data.csv)
Hello. This is less a "bug" and more "i'm unsure what is being reported by the output".
I have the…
mz555 updated
2 months ago
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I was doodling and realized that while everything in the single-atom Ebisu case (v2 and v3) takes `pNow = p**(elapsed / t)` for an atom parameterized by `[a, b, t]` (where the probability recall at ti…
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I can run fastLink() stringdist.match on two variables on my datasets with up to 20k rows but with more rows, I get the following error (and a crash in RStudio) during the "Getting counts for paramete…
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- To illustrate my question, I ran the covariateModel as described in https://keyatm.github.io/keyATM/articles/pkgdown_files/keyATM_cov.html based on preparing the data as described in https://keyatm.…
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The issue with the hyperspherical variational autoencoder is not caused by the von Mises-Fisher distribution, but by a common problem of VAE known as `Posterior Collapse`. The normal planar latent spa…
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Migrated from https://redmine.open-bio.org/issues/3407
@bendmorris said:
> This was reported to me by Arlin Stoltzfus (quote):
>
> > There is a description of Newick here:
> >
> > http://evolution…