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For especially lymphoid organ tables like lymph node, spleen, thymus, these tables had plus, minus and intermediate level markers provided. To accommodate this, we devised using different color lin…
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I'm also trying to compare the Olympia oyster transcriptome to my proteome. Is the sequence of steps something along the lines of...
Create a nucl database with the Oly transcriptome fasta file
Us…
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Protein Viewer not working with GPU only slots
https://foldingforum.org/viewtopic.php?f=104&t=29138
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For a given set of GO terms and Taxonomy nodes show the proteins linked to their GO term and their Taxon node.
For this I suggest something simple to start with, something based on this https://githu…
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- PyMol; A free and flexible molecular graphics and modelling package which can be also used to generate animated sequences; https://www.pymol.org/
![pymol](https://cloud.githubusercontent.com/asset…
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Hi, I'm currently trying to compute the Dictionary of protein secondary structure (DSSP) secondary structure assignments for peptide that is capped with ACE and NME residue. mdtraj supports this calcu…
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### Problem
Hello! I am having trouble getting the bullet points to work on my sphinx_rtd_theme project. I updated my conda environment and it seems that the bullet points were one of the things th…
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Good day!
I really like СellChat. Thank you for the tool with such helpful analysis and beautiful visualization.
I analyze scRNA-seq of few metastasis samples. Each sample has about 6000-9000 c…
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## Reclustering of summarized data
### Definitions:
* Observations: typically a cell or group of cells
* Features: typically a gene, protein, or group of genes or proteins.
### Assumptions
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The ocore should write energy levels and atomic information to a file at every frame, possibly putting them all inside a folder so cleanup is easy. FAHClient provides an API call for gathering atomic …